3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09517

Details:

PFam ID : PF09517

PFam Domain Description : Eco29kI restriction endonuclease

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 30

Average sequence length: 157.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09517	A3VWG8_9RHOB_53_140	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09517	A5V0F1_ROSS1_310_496	100

Sequence based PCA Plot of the family - PF09517 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=62 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay