3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09515

Details:

PFam ID : PF09515

PFam Domain Description : Thiamine transporter protein (Thia_YuaJ)

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 200

Average sequence length: 164.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09515	B5YEN3_DICT6_164_264	73.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09515	D5DET6_BACMD_1_119	100

Sequence based PCA Plot of the family - PF09515 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=149 Length=8
Motif3 Start=164 Length=8
Motif4 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay