3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09508

Details:

PFam ID : PF09508

PFam Domain Description : Lacto-N-biose phosphorylase

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 80

Average sequence length: 657.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09508	D3AMZ3_9CLOT_1_261	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09508	C9QAB1_9VIBR_9_727	100

Sequence based PCA Plot of the family - PF09508 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=181 Length=8
Motif2 Start=96 Length=14
Motif3 Start=169 Length=8
Motif4 Start=76 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay