3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09507

Details:

PFam ID : PF09507

PFam Domain Description : DNA polymerase subunit Cdc27

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 162

Average sequence length: 326.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09507	B6JWN7_SCHJY_162_343	63.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09507	B6JWN7_SCHJY_162_343	100

Sequence based PCA Plot of the family - PF09507 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8
Motif4 Start=480 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay