3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09506

Details:

PFam ID : PF09506

PFam Domain Description : Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 27

Average sequence length: 362.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09506	Q1PJL6_PROMA_18_187	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09506	Q7V248_PROMP_16_394	100

Sequence based PCA Plot of the family - PF09506 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=74 Length=17
Motif2 Start=43 Length=11
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay