3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09502

Details:

PFam ID : PF09502

PFam Domain Description : Bacterial type III secretion protein (HrpB4)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 21

Average sequence length: 193.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09502	C0YBC2_BURPS_6_139	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09502	B7CZG8_BURPS_6_249	100

Sequence based PCA Plot of the family - PF09502 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay