3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09497

Details:

PFam ID : PF09497

PFam Domain Description : Transcription mediator complex subunit Med12

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 79

Average sequence length: 63.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09497	Q55KW8_CRYNE_92_171	8.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09497	Q55KW8_CRYNE_92_171	100

Sequence based PCA Plot of the family - PF09497 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay