3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09496

Details:

PFam ID : PF09496

PFam Domain Description : Cenp-O kinetochore centromere component

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 76

Average sequence length: 90.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09496	B6QSP4_PENMQ_111_226	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09496	B9WIS6_CANDC_162_255	100

Sequence based PCA Plot of the family - PF09496 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=6 Length=17
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay