3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09493

Details:

PFam ID : PF09493

PFam Domain Description : Tryptophan-rich protein (DUF2389)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 114

Average sequence length: 59.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09493	A4B9W8_9GAMM_1_44	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09493	B0SIJ5_LEPBA_17_79	100

Sequence based PCA Plot of the family - PF09493 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay