3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09488

Details:

PFam ID : PF09488

PFam Domain Description : Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 34

Average sequence length: 376.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09488	D1ZAW1_SORMK_64_479	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09488	D1ZAW1_SORMK_64_479	100

Sequence based PCA Plot of the family - PF09488 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=157 Length=11
Motif2 Start=250 Length=8
Motif3 Start=193 Length=8
Motif4 Start=315 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay