3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09487

Details:

PFam ID : PF09487

PFam Domain Description : Bacterial type III secretion protein (HrpB2)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 18

Average sequence length: 111.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09487	B1K599_BURCC_4_161	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09487	E5AVI3_BURRH_14_137	100

Sequence based PCA Plot of the family - PF09487 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay