3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09485

Details:

PFam ID : PF09485

PFam Domain Description : CRISPR-associated protein Cse2 (CRISPR_cse2)

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 192

Average sequence length: 147.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09485	D3D4C9_9ACTO_46_260	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09485	E4N247_KITSK_1_67	98.9

Sequence based PCA Plot of the family - PF09485 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=173 Length=8
Motif4 Start=188 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay