3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09484

Details:

PFam ID : PF09484

PFam Domain Description : CRISPR-associated protein TM1802 (cas_TM1802)

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 78

Average sequence length: 489.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09484	A7BQN6_9GAMM_26_573	84.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09484	E4S8Z9_CALKI_1_622	100

Sequence based PCA Plot of the family - PF09484 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=335 Length=8
Motif3 Start=618 Length=8
Motif4 Start=355 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay