3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09482

Details:

PFam ID : PF09482

PFam Domain Description : Bacterial type III secretion apparatus protein (OrgA_MxiK)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 32

Average sequence length: 161.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09482	D2TZ25_9ENTR_7_182	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09482	Q2T730_BURTA_6_192	100

Sequence based PCA Plot of the family - PF09482 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay