3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09481

Details:

PFam ID : PF09481

PFam Domain Description : CRISPR-associated protein Cse1 (CRISPR_cse1)

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 188

Average sequence length: 455.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09481	E4V8X7_BIFBI_9_184	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09481	D2L2X5_9DELT_5_510	100

Sequence based PCA Plot of the family - PF09481 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=152 Length=8
Motif2 Start=202 Length=8
Motif3 Start=86 Length=14
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay