3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09480

Details:

PFam ID : PF09480

PFam Domain Description : Type III secretion system protein PrgH-EprH (PrgH)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 29

Average sequence length: 325.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09480	B2VEF8_ERWT9_21_415	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09480	D4C203_PRORE_9_397	100

Sequence based PCA Plot of the family - PF09480 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=16 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay