3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09479

Details:

PFam ID : PF09479

PFam Domain Description : Flagellar transcriptional activator (FlhC)

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 1024

Average sequence length: 41.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09479	C0C5X3_9CLOT_650_700	99.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09479	D5HEY4_9FIRM_69_110	99.4

Sequence based PCA Plot of the family - PF09479 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=4 Length=17
Motif2 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay