3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09478

Details:

PFam ID : PF09478

PFam Domain Description : Carbohydrate binding domain CBM49

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 183

Average sequence length: 81.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09478	Q55BZ9_DICDI_29_123	76.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09478	Q55BZ9_DICDI_29_123	100

Sequence based PCA Plot of the family - PF09478 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=72 Length=8
Motif3 Start=20 Length=8
Motif4 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay