3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09475

Details:

PFam ID : PF09475

PFam Domain Description : Dot/Icm secretion system protein (dot_icm_IcmQ)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 33

Average sequence length: 173.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09475	MTRF_METKA_11_75	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09475	B6J557_COXB1_57_234	100

Sequence based PCA Plot of the family - PF09475 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=153 Length=8
Motif2 Start=78 Length=11
Motif3 Start=91 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay