3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09474

Details:

PFam ID : PF09474

PFam Domain Description : Type III secretion system YscX (type_III_YscX)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 14

Average sequence length: 107.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09474	MTRF_METKA_11_75	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09474	E3BLV1_9VIBR_1_125	100

Sequence based PCA Plot of the family - PF09474 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay