3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09471

Details:

PFam ID : PF09471

PFam Domain Description : IgA Peptidase M64

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 124

Average sequence length: 232.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09471	A7VFA5_9CLOT_276_574	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09471	C6IHX5_9BACE_276_541	100

Sequence based PCA Plot of the family - PF09471 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=205 Length=8
Motif2 Start=118 Length=8
Motif3 Start=183 Length=8
Motif4 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay