3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09469

Details:

PFam ID : PF09469

PFam Domain Description : Cordon-bleu domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 36

Average sequence length: 256.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09469	A7RUT8_NEMVE_190_509	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09469	D6WJP3_TRICA_2_379	100

Sequence based PCA Plot of the family - PF09469 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=312 Length=8
Motif3 Start=78 Length=8
Motif4 Start=285 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay