3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09468

Details:

PFam ID : PF09468

PFam Domain Description : Ydr279p protein family (RNase H2 complex component)

Number of Sequence in 50% Dataset : 94

Number of Sequence in Full Dataset : 165

Average sequence length: 275.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09468	D2UX89_NAEGR_1_218	79.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09468	B4HA19_DROPE_32_337	100

Sequence based PCA Plot of the family - PF09468 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=167 Length=8
Motif2 Start=184 Length=8
Motif3 Start=100 Length=11
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay