3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09466

Details:

PFam ID : PF09466

PFam Domain Description : Hypothetical protein Yqai

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 24

Average sequence length: 61.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09466	B7GIL2_ANOFW_27_82	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09466	C3EDG0_BACTU_1_69	100

Sequence based PCA Plot of the family - PF09466 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=10 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay