3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09465

Details:

PFam ID : PF09465

PFam Domain Description : Lamin-B receptor of TUDOR domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 22

Average sequence length: 47.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09465	C5YKE6_SORBI_245_290	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09465	Q4TFR3_TETNG_6_56	100

Sequence based PCA Plot of the family - PF09465 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay