3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09462

Details:

PFam ID : PF09462

PFam Domain Description : Mus7/MMS22 family

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 69

Average sequence length: 478.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09462	A8NA14_COPC7_1325_1589	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09462	A5DRN6_LODEL_281_620	95.5

Sequence based PCA Plot of the family - PF09462 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay