Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09458
Details:

PFam ID : PF09458

PFam Domain Description : H-type lectin domain

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 228

Average sequence length: 70.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF09458A8JHE0_CHLRE_678_73590.6
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF09458A0BFN8_PARTE_45_124100
Sequence based PCA Plot of the family - PF09458 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay