3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09457

Details:

PFam ID : PF09457

PFam Domain Description : FIP domain

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 59

Average sequence length: 43.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09457	A8WIU8_CAEBR_437_484	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09457	C1LZ88_SCHMA_118_158	100

Sequence based PCA Plot of the family - PF09457 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay