3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09455

Details:

PFam ID : PF09455

PFam Domain Description : CRISPR-associated (Cas) DxTHG family

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 180

Average sequence length: 338.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09455	E6N702_9ARCH_17_321	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09455	B1Y8K5_THENV_5_432	98.3

Sequence based PCA Plot of the family - PF09455 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=17
Motif2 Start=419 Length=8
Motif3 Start=139 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay