3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09451

Details:

PFam ID : PF09451

PFam Domain Description : Autophagy-related protein 27

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 131

Average sequence length: 210.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09451	E2C1N1_9HYME_2_48	74.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09451	C5DKF6_LACTC_7_283	98.4

Sequence based PCA Plot of the family - PF09451 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay