3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09449

Details:

PFam ID : PF09449

PFam Domain Description : Domain of unknown function (DUF2020)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 23

Average sequence length: 129.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09449	C3PKA8_CORA7_1_120	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09449	C3PKA8_CORA7_1_120	100

Sequence based PCA Plot of the family - PF09449 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=18
Motif2 Start=69 Length=8
Motif3 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay