3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09444

Details:

PFam ID : PF09444

PFam Domain Description : MRC1-like domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 60

Average sequence length: 134.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09444	F2SI35_TRIRU_866_934	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09444	A8PYB5_MALGO_799_974	100

Sequence based PCA Plot of the family - PF09444 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay