3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09443

Details:

PFam ID : PF09443

PFam Domain Description : Cripto_Frl-1_Cryptic (CFC)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 17

Average sequence length: 32.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09443	C3YTD7_BRAFL_34_60	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09443	D1LWZ3_SACKO_67_101	100

Sequence based PCA Plot of the family - PF09443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay