3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09442

Details:

PFam ID : PF09442

PFam Domain Description : Domain of unknown function (DUF2018)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 35

Average sequence length: 80.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09442	ABP2_SCHPO_4_166	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09442	C3XH46_9HELI_12_96	100

Sequence based PCA Plot of the family - PF09442 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay