3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09441

Details:

PFam ID : PF09441

PFam Domain Description : ARS binding protein 2

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 31

Average sequence length: 162.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09441	ABP2_SCHPO_4_166	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09441	ABP2_SCHPO_4_166	100

Sequence based PCA Plot of the family - PF09441 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=108 Length=8
Motif3 Start=96 Length=8
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay