3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09440

Details:

PFam ID : PF09440

PFam Domain Description : eIF3 subunit 6 N terminal domain

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 108

Average sequence length: 123.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09440	Q4D7F2_TRYCR_3_126	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09440	B7G3T4_PHATC_13_154	100

Sequence based PCA Plot of the family - PF09440 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=134 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay