3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09438

Details:

PFam ID : PF09438

PFam Domain Description : Domain of unknown function (DUF2017)

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 129

Average sequence length: 178.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09438	C0W2H4_9ACTO_4_221	95.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09438	C0W2H4_9ACTO_4_221	100

Sequence based PCA Plot of the family - PF09438 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=106 Length=8
Motif2 Start=88 Length=8
Motif3 Start=204 Length=8
Motif4 Start=150 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay