3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09435

Details:

PFam ID : PF09435

PFam Domain Description : Fungal protein of unknown function (DUF2015)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 57

Average sequence length: 118.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09435	YFF7_SCHPO_1_119	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09435	YFF7_SCHPO_1_119	100

Sequence based PCA Plot of the family - PF09435 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=52 Length=8
Motif2 Start=67 Length=8
Motif3 Start=92 Length=8
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay