3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09428

Details:

PFam ID : PF09428

PFam Domain Description : Fungal protein of unknown function (DUF2011)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 57

Average sequence length: 147.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09428	Q6C2T5_YARLI_109_257	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09428	Q6C2T5_YARLI_109_257	100

Sequence based PCA Plot of the family - PF09428 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=121 Length=8
Motif3 Start=156 Length=11
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay