3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09427

Details:

PFam ID : PF09427

PFam Domain Description : Domain of unknown function (DUF2014)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 34

Average sequence length: 248.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09427	A5DHW5_PICGU_475_620	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09427	F0X9I3_9PEZI_765_1048	100

Sequence based PCA Plot of the family - PF09427 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay