3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09425

Details:

PFam ID : PF09425

PFam Domain Description : Divergent CCT motif

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 144

Average sequence length: 26.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09425	A9GBH7_SORC5_44_694	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09425	C5XGY7_SORBI_79_100	99.3

Sequence based PCA Plot of the family - PF09425 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay