3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09424

Details:

PFam ID : PF09424

PFam Domain Description : Yqey-like protein

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 847

Average sequence length: 141.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09424	A9GBH7_SORC5_44_694	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09424	C6XRH8_HIRBI_16_165	100

Sequence based PCA Plot of the family - PF09424 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8
Motif4 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay