3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09422

Details:

PFam ID : PF09422

PFam Domain Description : WTX protein

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 37

Average sequence length: 270

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09422	E6ZIG0_DICLA_76_167	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09422	F1MQR3_BOVIN_60_205	100

Sequence based PCA Plot of the family - PF09422 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay