3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09421

Details:

PFam ID : PF09421

PFam Domain Description : Frequency clock protein

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 25

Average sequence length: 714.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09421	B8M9C0_TALSN_224_638	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09421	A6SM61_BOTFB_5_957	100

Sequence based PCA Plot of the family - PF09421 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=401 Length=8
Motif2 Start=564 Length=8
Motif3 Start=731 Length=11
Motif4 Start=615 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay