3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09419

Details:

PFam ID : PF09419

PFam Domain Description : Mitochondrial PGP phosphatase

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 167

Average sequence length: 151.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09419	A5LX89_STRPN_2_68	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09419	B8ML85_TALSN_9_190	100

Sequence based PCA Plot of the family - PF09419 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay