3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09412

Details:

PFam ID : PF09412

PFam Domain Description : Endoribonuclease XendoU

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 115

Average sequence length: 241.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09412	B3ENS9_CHLPB_2_321	89.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09412	E1FJX7_LOALO_1_73	100

Sequence based PCA Plot of the family - PF09412 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay