3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09411

Details:

PFam ID : PF09411

PFam Domain Description : Lipid A 3-O-deacylase (PagL)

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 304

Average sequence length: 139.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09411	Q8Z577_SALTI_1_86	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09411	A3HTG3_9BACT_30_201	100

Sequence based PCA Plot of the family - PF09411 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay