3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09405

Details:

PFam ID : PF09405

PFam Domain Description : CASC3/Barentsz eIF4AIII binding

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 123

Average sequence length: 122.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09405	A8NYV3_COPC7_183_327	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09405	A8NYV3_COPC7_183_327	100

Sequence based PCA Plot of the family - PF09405 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay