3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09404

Details:

PFam ID : PF09404

PFam Domain Description : Eukaryotic protein of unknown function (DUF2003)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 41

Average sequence length: 239.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09404	D0NG81_PHYIT_72_303	32.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09404	B7PZ22_IXOSC_8_211	100

Sequence based PCA Plot of the family - PF09404 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay