3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09402

Details:

PFam ID : PF09402

PFam Domain Description : Man1-Src1p-C-terminal domain

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 165

Average sequence length: 251.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09402	B7PT17_IXOSC_198_493	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09402	Q756G3_ASHGO_530_909	100

Sequence based PCA Plot of the family - PF09402 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=354 Length=8
Motif2 Start=12 Length=14
Motif3 Start=400 Length=8
Motif4 Start=87 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay